Coverage for src/crawler/by_source/ams/ams_base_crawler.py: 26%

1import json 

2import os 

3from urllib.parse import urljoin 

4from uuid import uuid4 

5 

6from bs4 import BeautifulSoup 

7from ptf.cmds.xml.jats.jats_parser import JatsBase 

8from ptf.model_data import create_abstract 

9from ptf.utils import execute_cmd 

10 

11from crawler.base_crawler import BaseCollectionCrawler 

12from crawler.utils import skip_generation 

13 

14 

15class AmsCrawler(BaseCollectionCrawler): 

16 source_name = "American Mathematical Society" 

17 source_domain = "AMS" 

18 source_website = "https://www.ams.org/" 

19 

20 @skip_generation 

21 def parse_collection_content(self, content): 

22 xissues = [] 

23 soup = BeautifulSoup(content, "html.parser") 

24 issues_data_tag = soup.select_one("script[language='JavaScript']:not([src])") 

25 issues = json.loads(self.get_col_issues(issues_data_tag.text)) 

26 for i in issues: 

27 xissues.append( 

28 self.create_xissue( 

29 urljoin(self.collection_url, issues[i]["url"]), 

30 issues[i]["year"], 

31 issues[i]["volume"], 

32 issues[i].get("number", None), 

33 ) 

34 ) 

35 return xissues 

36 

37 def get_col_issues(self, input: str): 

38 filename = "/tmp/crawler/puppeteer/" + str(uuid4()) 

39 filename_out = filename + "-out" 

40 os.makedirs(os.path.dirname(filename), exist_ok=True) 

41 with open(filename, "w") as file: 

42 file.write(input) 

43 

44 content = None 

45 attempt = 0 

46 while not content and attempt < 3: 

47 attempt += 1 

48 cmd = f"{os.path.dirname(os.path.realpath(__file__))}/ams_crawler_col.js -f {filename} -o {filename_out}" 

49 print(cmd) 

50 execute_cmd(cmd) 

51 

52 if os.path.isfile(filename_out): 

53 with open(filename_out) as file_: 

54 content = file_.read() 

55 

56 os.remove(filename) 

57 os.remove(filename_out) 

58 

59 if not content: 

60 raise ValueError("Couldn't parse collection content") 

61 return content 

62 

63 def parse_article_content(self, content, xissue, xarticle, url): 

64 soup = BeautifulSoup(content, "html.parser") 

65 self.get_metadata_using_citation_meta( 

66 xarticle, xissue, soup, ["author", "page", "doi", "references", "pdf", "title"] 

67 ) 

68 if len(xarticle.bibitems) > 0: 

69 xarticle.abstracts.append(JatsBase.compile_refs(xarticle.bibitems)) 

70 

71 abstract_subtag = soup.select_one("a#Abstract") 

72 if abstract_subtag: 

73 abstract_tag = abstract_subtag.parent 

74 if abstract_tag: 

75 abstract_subtag.decompose() 

76 xarticle.abstracts.append( 

77 create_abstract(lang="en", tag="abstract", value_tex=abstract_tag.text) 

78 ) 

79 

80 return xarticle